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<td align=left><a href="../summary.html">Return to main results</a></td>
<td align=right>Retrieve Phyre Job Id <input type="text" SIZE=30 NAME="jobid"><input type="submit" value="Fetch" name="fetch"></font>
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<center><p><table width=70% border=0 cellspacing=1 cellpadding=1><tr><td><img src="../webimg/playing.png"></td>
<td><table class="midshade"><tr><td class="darkshade" style="width:12em;">Job Description</td><td colspan=3>Ice2_____</td></tr><tr><td class="darkshade">Confidence</td><td>5.38%</td><td class="darkshade">Date</td><td>Fri Feb 12 18:45:40 GMT 2021</td></tr>
<tr><td class="darkshade">Rank</td><td>62</td><td class="darkshade">Aligned Residues</td><td>9</td></tr>
<tr><td class="darkshade">% Identity</td><td>56%</td><td class="darkshade">Template</td><td>c1javA_</td></tr>
<tr><td class="darkshade">PDB info</td>
<td><b>PDB header:</b>viral protein</td><td><b>Chain: </b>A: <b>PDB Molecule:</b>transmembrane glycoprotein (gp41);</td><td>
<b>PDBTitle:</b> average nmr solution structure of the trp-rich peptide of2 hiv gp41 bound to dpc micelles
</td></tr>
<tr><td class="darkshade">Resolution</td><td colspan=3>UNK</td></tr>
</table>
</tr></table></p>
<p><button onclick="toggle('confidence');">Show / Hide SS confidence</button></p>
<p><button onclick="toggle('consqual');">Show / Hide Conservation and Alignment quality</button></p>
<p><table width=95%><tr><td align=left><a class="logo" href="http://www.sbg.bio.ic.ac.uk/phyre2/webscripts/make_pdf.cgi?fileid=a721a0f25048fc30/aligs/c1javA_.62.alig.html" onClick ="return hideTip();" onMouseOver="return tooltip('Generate JPEG image of this page.', '', 'width:200');" onMouseOut="return hideTip();"><img border=0 src="../webimg/jpeg_icon.jpg"></a></td></tr></table></p>
<table border=0><tr><td bgcolor=darkred>&nbsp;&nbsp</td><td>Insertion relative to template</td>
<tr><td bgcolor=orange>&nbsp;&nbsp</td><td>Deletion relative to template</td></tr>
<tr><td style="border-style:solid; border-width:thick; border-color:red;">&nbsp;&nbsp</td><td>Catalytic residue from the <a href="http://www.ebi.ac.uk/thornton-srv/databases/CSA/">CSA</a></td></tr>
<tr><td colspan=2>&nbsp</td></tr>
<tr><td colspan=2><a href="http://www.sbg.bio.ic.ac.uk/phyre2/html/help.cgi?id=help/interpret_normal#alignment">Detailed help on interpreting your alignment</a></td></tr></table>
<br><br>
<table cellpadding=0 cellspacing=0>
<tr>
<td style="width:100px;">&nbsp</td><td>&nbsp</td>
<td class="index">467</td><td class="index">.</td><td class="index">.</td><td class="index">470</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td>.</td></tr>
<tr>
<td class="darkshade">Predicted Secondary structure</td><td>&nbsp</td>
<td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td></tr>
<tr confidence=1 style="display:none;">
<td class="darkshade">Query SS confidence</td><td>&nbsp</td>
<td><hr color="#76c0d1" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td></tr>
<tr>
<td class="midshadess">Query Sequence</td><td>&nbsp</td>
<td style="color:6600CC;">W</td><td style="color:ff6600;">G</td><td style="color:0000cc;">F</td><td style="color:6600CC; background-color:#d2d0c1">W</td><td style="color:990000; background-color:#d2d0c1">N</td><td style="color:6600CC; background-color:#d2d0c1">W</td><td style="color:6600CC;">C</td><td style="color:990000; background-color:#d2d0c1">N</td><td style="color:009900; background-color:#d2d0c1">I</td></tr>
<tr consqual=1 style="display:none">
<td class="darkshade">Query Conservation</td><td>&nbsp</td>
<td><hr color=#737065 size=4></td><td>&nbsp</td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td><td><hr color=#737065 size=10></td><td><hr color=#737065 size=4></td></tr>
<tr consqual=1 style="display:none">
<td class="midshadess">Alig confidence</td><td>&nbsp</td>
<td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#c93c38" size=4></td><td><hr color="#65b449" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#c93c38" size=4></td></tr>
<tr consqual=1 style="display:none">
<td class="darkshade">Template Conservation</td><td>&nbsp</td>
<td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td><td><hr color=#d2d0c1 size=4></td></tr>
<tr>
<td class="midshadess">Template Sequence</td><td>&nbsp</td>
<td style="color:ff6600;">A</td><td style="color:ff6600;">S</td><td style="color:009900;">L</td><td style="color:6600CC; background-color:#d2d0c1">W</td><td style="color:990000; background-color:#d2d0c1">N</td><td style="color:6600CC; background-color:#d2d0c1">W</td><td style="color:0000cc;">F</td><td style="color:990000; background-color:#d2d0c1">N</td><td style="color:009900; background-color:#d2d0c1">I</td></tr>
<tr>
<td class="midshadess">Template Predicted Secondary structure</td><td>&nbsp</td>
<td><hr></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td><td class="helix"><img class="helimg" src="../webimg/helix2small.png"></td></tr>
<tr confidence=1 style="display:none">
<td class="darkshade">Template SS confidence</td><td>&nbsp</td>
<td><hr color="#6f6da5" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#91a0cb" size=4></td><td><hr color="#6f6da5" size=4></td><td><hr color="#3f3d81" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#e68d3d" size=4></td><td><hr color="#f1d532" size=4></td><td><hr color="#e68d3d" size=4></td></tr>
<tr>
<td style="width:100px;">&nbsp</td><td>&nbsp</td>
<td class="index">3</td><td class="index">.</td><td>.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">.</td><td class="index">10</td><td class="index">.</td></tr>
<tr><td>&nbsp</td></tr>
</table>
<table width=30% border=0><tr>
<td style="width:7em;" class="darkshadelalig">Download:</td><td class="midshade"><a href="c1javA_.62.alig.txt">Text version</a></td>
<td class="midshade"><a href="http://www.sbg.bio.ic.ac.uk/phyre2/webscripts/genfasta.cgi?jobid=a721a0f25048fc30&rank=62">FASTA version</a></td>
</tr></table><p>No model constructed - rank, confidence too low</p>
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<table width=60% border=0>
<tr align=center><td colspan=3><font size=-1><b>Please cite:</b> The Phyre2 web portal for protein modeling, prediction and analysis</font></td></tr> 

<tr align=center><td colspan=3><font size=-1>Kelley LA <i>et al.</i> <i>Nature Protocols</i>
10, 845-858 (2015)
      [<a href="http://www.nature.com/nprot/journal/v10/n6/full/nprot.2015.053.html">paper</a>]
      [<a href="http://www.nature.com/nprot/journal/v10/n6/ris/nprot.2015.053.ris">Citation
	link</a>]</font></td></tr> 
<tr><td colspan=3>&nbsp</td></tr>
<tr><td align=center>

<table border=0> 

<tr><td><font size=-2>&copy <a href="http://www.sbg.bio.ic.ac.uk">Structural Bioinformatics Group</a>, Imperial College, London</td></tr> 

<tr><td><font size=-2><a
href="http://www.sbg.bio.ic.ac.uk/people/kelley/kelley.html">Lawrence
Kelley</a>, <a href="http://www.imperial.ac.uk/people/m.sternberg">Michael Sternberg</a></td><td>&nbsp</td></tr> 
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